The only way to minimize that from happening again is to run the aeration system long enough per day to homogenize the water column as much as possible from top to bottom.

www.hoosierpondpros.com

[Linked Image from lh6.ggpht.com]
http://www.pondboss.com/subscribe.asp?c=4
3/4 to 1 1/4 ac pond LMB, SMB, PS, BG, RES, CC, YP, Bardello BG, (RBT & Blue Tilapia - seasonal).