Be patient. Our pond of 3 years now was very muddy for about 3 months. If your water clears in a bucket it will clear in the pond too. I agree with the above posts. Focus on getting the shoreline well established with a good strong grass area. That is key to the pond clearing.
Check my home page to see photos of my pond. It is highlighted on the Catskill Pond web site:
http://frontiernet.net/~catpond