Test soil samples and water. See below for soil. Water for alkalinity , N- P -K (same as in soil) for fertility (visibility as a alternative) , DO's and turbidity if needed. Here is a link to a very good paper on water quality.
A Fish Farmer's Guide to Understanding Water Quality
http://aquanic.org/publicat/state/il-in/as-503.htm Soil tests - probably do water as well
Indiana
A&L Great Lakes Laboratories, Inc
3505 Conestoga Dr., Ft. Wayne, IN 46808
(260) 483-4759
www.algreatlakes.com Soil test cost: $15.
Includes: Organic matter, available P, exchangeable K, Mg, Ca, soil pH, buffer pH and fertilizer recommendations.
To submit sample: Send in zip-lock bag to above address.
Common regional problems: High pH and low K.
Michigan
MSU Soil & Plant Nutrient Laboratory
A-81 Plant & Soil Sciences Bldg., Michigan State University, East Lansing, MI 48824
(517) 355-0218
web.css.msu.edu/SoilTesting/Stl.html
Soil test cost: $9.
Includes: pH, lime requirements, P, K, Ca, Mg.
To submit samples: Purchase a kit at your local country extension office or send sample with check to above address.
Common regional problems: Acidic soil, micronutrient deficiencies, too much P.
Minnesota
Soil Testing Laboratory - University of Minnesota
1902 Dudley Ave., St. Paul, MN 55108
(612) 625-3101
soiltest.coafes.umn.edu
Soil test cost: $10.
Includes: P, K, pH, lime requirement (if necessary), organic matter, estimated texture.
To submit samples: Send sample and payment to above address.
Common regional problems: K deficiencies; in some areas, P and lime are needed; soils in region vary.